IL_8Z71_162

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

8Z71|1|A|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z71_162 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.141

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

8Z71|1|A|C|1918
8Z71|1|A|G|1919
8Z71|1|A|U|1920
8Z71|1|A|A|1921
8Z71|1|A|A|1922
8Z71|1|A|C|1923
*
8Z71|1|A|G|1928
8Z71|1|A|G|1929
8Z71|1|A|A|1930
8Z71|1|A|U|1931
8Z71|1|A|A|1932
8Z71|1|A|A|1933
8Z71|1|A|G|1934

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain p

Large ribosomal subunit protein eL41A

Chain r

Large ribosomal subunit protein eL43A