IL_8Z71_173

3D structure

PDB id

8Z71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

State 1a (S1a) of yeast 80S ribosome bound to open eEF3 and 2 tRNAs and eEF1A during mRNA decoding

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8Z71|1|A|A|2281, 8Z71|1|A|C|2287, 8Z71|1|A|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8Z71_173 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.0958

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8Z71|1|A|C|2277
8Z71|1|A|C|2278
8Z71|1|A|A|2279
8Z71|1|A|A|2280
8Z71|1|A|A|2281
8Z71|1|A|U|2282
8Z71|1|A|G|2283
8Z71|1|A|C|2284
8Z71|1|A|C|2285
8Z71|1|A|U|2286
8Z71|1|A|C|2287
8Z71|1|A|G|2288
*
8Z71|1|A|C|2304
8Z71|1|A|G|2305
8Z71|1|A|C|2306
8Z71|1|A|G|2307

Current chains

Chain A

25S rRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain p

Large ribosomal subunit protein eL41A