IL_8ZDB_012

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8ZDB|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_012 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8ZDB|1|2|G|145
8ZDB|1|2|G|146
8ZDB|1|2|A|147
8ZDB|1|2|U|148
8ZDB|1|2|A|149
8ZDB|1|2|A|150
8ZDB|1|2|C|151
*
8ZDB|1|2|G|167
8ZDB|1|2|C|168
8ZDB|1|2|U|169
8ZDB|1|2|A|170
8ZDB|1|2|A|171
8ZDB|1|2|U|172
8ZDB|1|2|A|173
8ZDB|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

Small ribosomal subunit protein eS24