IL_8ZDB_043

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_043 not in the Motif Atlas

Homologous match to IL_8P9A_417

Geometric discrepancy: 0.1357

The information below is about IL_8P9A_417

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_74641.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

33

Unit IDs

8ZDB|1|2|A|922
8ZDB|1|2|G|923
*
8ZDB|1|2|C|1019
8ZDB|1|2|A|1020
8ZDB|1|2|U|1021
8ZDB|1|2|U|1022

Current chains

Chain 2

18S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS15

Chain W

Small ribosomal subunit protein uS8

Chain b

Small ribosomal subunit protein eS27