IL_8ZDB_045

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_045 not in the Motif Atlas

Homologous match to IL_8P9A_419

Geometric discrepancy: 0.0864

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8ZDB|1|2|G|928
8ZDB|1|2|G|929
8ZDB|1|2|C|930
8ZDB|1|2|C|931
*
8ZDB|1|2|G|1010
8ZDB|1|2|A|1011
8ZDB|1|2|A|1012
8ZDB|1|2|U|1013

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain N

Small ribosomal subunit protein uS15

Chain b

Small ribosomal subunit protein eS27