IL_8ZDB_050

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_050 not in the Motif Atlas

Homologous match to IL_8P9A_424

Geometric discrepancy: 0.1143

The information below is about IL_8P9A_424

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8ZDB|1|2|C|1047
8ZDB|1|2|G|1048
8ZDB|1|2|A|1049
8ZDB|1|2|A|1050
8ZDB|1|2|G|1051
*
8ZDB|1|2|C|1067
8ZDB|1|2|G|1068
8ZDB|1|2|U|1069
8ZDB|1|2|A|1070
8ZDB|1|2|G|1071

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS11

Chain a

Small ribosomal subunit protein eS26