IL_8ZDB_055

3D structure

PDB id

8ZDB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDB_055 not in the Motif Atlas

Homologous match to IL_8P9A_428

Geometric discrepancy: 0.1039

The information below is about IL_8P9A_428

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_84044.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

8ZDB|1|2|G|1168
8ZDB|1|2|G|1169
8ZDB|1|2|A|1170
8ZDB|1|2|G|1171
8ZDB|1|2|U|1172
8ZDB|1|2|A|1173
8ZDB|1|2|U|1174
8ZDB|1|2|G|1175
*
8ZDB|1|2|U|1186
8ZDB|1|2|G|1187
8ZDB|1|2|A|1188
8ZDB|1|2|A|1189
8ZDB|1|2|A|1190
8ZDB|1|2|C|1191

Current chains

Chain 2

18S rRNA

Nearby chains

Chain X

Small ribosomal subunit protein uS12

Chain h

Small ribosomal subunit protein eS32