IL_8ZDB_089
3D structure
- PDB id
- 8ZDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated 40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGAG*CGAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZDB_089 not in the Motif Atlas
- Homologous match to IL_8P9A_460
- Geometric discrepancy: 0.1308
- The information below is about IL_8P9A_460
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
8ZDB|1|2|U|1733
8ZDB|1|2|G|1734
8ZDB|1|2|A|1735
8ZDB|1|2|G|1736
*
8ZDB|1|2|C|1798
8ZDB|1|2|G|1799
8ZDB|1|2|A|1800
8ZDB|1|2|A|1801
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein eS6
- Chain I
- Small ribosomal subunit protein eS8
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