IL_8ZDC_003

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAA*UGACG

Length

9 nucleotides

Bulged bases

8ZDC|1|2|A|516

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_003 not in the Motif Atlas

Geometric match to IL_4WF9_016

Geometric discrepancy: 0.337

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8ZDC|1|2|C|37
8ZDC|1|2|A|38
8ZDC|1|2|A|39
8ZDC|1|2|A|40
*
8ZDC|1|2|U|514
8ZDC|1|2|G|515
8ZDC|1|2|A|516
8ZDC|1|2|C|517
8ZDC|1|2|G|518

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain u

Pre-rRNA-processing protein TSR1 homolog