IL_8ZDC_030

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCCA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_030 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.1971

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

8ZDC|1|2|U|566
8ZDC|1|2|C|567
8ZDC|1|2|C|568
8ZDC|1|2|A|569
*
8ZDC|1|2|U|581
8ZDC|1|2|U|582
8ZDC|1|2|A|583
8ZDC|1|2|A|584

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain Y

Small ribosomal subunit protein eS24

Chain u

Pre-rRNA-processing protein TSR1 homolog