IL_8ZDC_051

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_051 not in the Motif Atlas

Homologous match to IL_8C3A_442

Geometric discrepancy: 0.0734

The information below is about IL_8C3A_442

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.5

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8ZDC|1|2|C|1047
8ZDC|1|2|G|1048
8ZDC|1|2|A|1049
8ZDC|1|2|A|1050
8ZDC|1|2|G|1051
*
8ZDC|1|2|C|1067
8ZDC|1|2|G|1068
8ZDC|1|2|U|1069
8ZDC|1|2|A|1070
8ZDC|1|2|G|1071

Current chains

Chain 2

18S rRNA

Nearby chains

Chain O

Small ribosomal subunit protein uS11

Chain t

Protein LTV1 homolog