IL_8ZDC_068
3D structure
- PDB id
- 8ZDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 8ZDC|1|2|C|1331, 8ZDC|1|2|U|1494, 8ZDC|1|2|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZDC_068 not in the Motif Atlas
- Geometric match to IL_4V88_510
- Geometric discrepancy: 0.136
- The information below is about IL_4V88_510
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62984.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
8ZDC|1|2|U|1329
8ZDC|1|2|G|1330
8ZDC|1|2|C|1331
8ZDC|1|2|A|1332
8ZDC|1|2|U|1333
8ZDC|1|2|G|1334
8ZDC|1|2|G|1335
*
8ZDC|1|2|U|1492
8ZDC|1|2|C|1493
8ZDC|1|2|U|1494
8ZDC|1|2|G|1495
8ZDC|1|2|U|1496
8ZDC|1|2|G|1497
8ZDC|1|2|A|1498
8ZDC|1|2|U|1499
8ZDC|1|2|G|1500
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS3
- Chain K
- Small ribosomal subunit protein eS10
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain p
- Serine/threonine-protein kinase RIO3
- Chain u
- Pre-rRNA-processing protein TSR1 homolog
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