IL_8ZDC_075

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

ACU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_075 not in the Motif Atlas

Geometric match to IL_3SZX_002

Geometric discrepancy: 0.1229

The information below is about IL_3SZX_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8ZDC|1|2|A|1537
8ZDC|1|2|C|1538
8ZDC|1|2|U|1539
*
8ZDC|1|2|A|1594
8ZDC|1|2|U|1595
8ZDC|1|2|U|1596

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein uS7

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19

Chain Z

Small ribosomal subunit protein eS25