IL_8ZDC_076
3D structure
- PDB id
- 8ZDC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCUCAGCGUG*CCGUUGAACCC
- Length
- 21 nucleotides
- Bulged bases
- 8ZDC|1|2|U|1585, 8ZDC|1|2|G|1587
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8ZDC|1|2|G|1541
8ZDC|1|2|C|1542
8ZDC|1|2|U|1543
8ZDC|1|2|C|1544
8ZDC|1|2|A|1545
8ZDC|1|2|G|1546
8ZDC|1|2|C|1547
8ZDC|1|2|G|1548
8ZDC|1|2|U|1549
8ZDC|1|2|G|1550
*
8ZDC|1|2|C|1582
8ZDC|1|2|C|1583
8ZDC|1|2|G|1584
8ZDC|1|2|U|1585
8ZDC|1|2|U|1586
8ZDC|1|2|G|1587
8ZDC|1|2|A|1588
8ZDC|1|2|A|1589
8ZDC|1|2|C|1590
8ZDC|1|2|C|1591
8ZDC|1|2|C|1592
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS3
- Chain F
- Small ribosomal subunit protein uS7
- Chain Q
- Small ribosomal subunit protein uS9
- Chain T
- Small ribosomal subunit protein eS19
- Chain U
- Small ribosomal subunit protein uS10
- Chain Z
- Small ribosomal subunit protein eS25
- Chain d
- Small ribosomal subunit protein uS14
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