IL_8ZDC_078

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGGAUCG*CAUGAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_078 not in the Motif Atlas

Homologous match to IL_8C3A_469

Geometric discrepancy: 0.1379

The information below is about IL_8C3A_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10092.1

Basepair signature

cWW-tSH-tSH-L-R-cWW-L-R-cWW

Number of instances in this motif group

1

Unit IDs

8ZDC|1|2|G|1604
8ZDC|1|2|G|1605
8ZDC|1|2|G|1606
8ZDC|1|2|A|1607
8ZDC|1|2|U|1608
8ZDC|1|2|C|1609
8ZDC|1|2|G|1610
*
8ZDC|1|2|C|1629
8ZDC|1|2|A|1630
8ZDC|1|2|U|1631
8ZDC|1|2|G|1632
8ZDC|1|2|A|1633
8ZDC|1|2|A|1634
8ZDC|1|2|C|1635

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

Small ribosomal subunit protein uS13

Chain T

Small ribosomal subunit protein eS19