IL_8ZDC_082

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_082 not in the Motif Atlas

Homologous match to IL_8C3A_475

Geometric discrepancy: 0.2757

The information below is about IL_8C3A_475

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8ZDC|1|2|C|1717
8ZDC|1|2|G|1718
8ZDC|1|2|A|1719
8ZDC|1|2|U|1720
*
8ZDC|1|2|A|1813
8ZDC|1|2|G|1814
8ZDC|1|2|A|1815
8ZDC|1|2|G|1816

Current chains

Chain 2

18S rRNA

Nearby chains

Chain t

Protein LTV1 homolog

Chain u

Pre-rRNA-processing protein TSR1 homolog