IL_8ZDC_089

3D structure

PDB id

8ZDC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDC_089 not in the Motif Atlas

Geometric match to IL_5TBW_101

Geometric discrepancy: 0.2608

The information below is about IL_5TBW_101

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_39137.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8ZDC|1|2|C|1751
8ZDC|1|2|C|1752
*
8ZDC|1|2|G|1780
8ZDC|1|2|A|1781
8ZDC|1|2|G|1782

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6