IL_8ZDD_013

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8ZDD|1|2|U|172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_013 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1036

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8ZDD|1|2|G|145
8ZDD|1|2|G|146
8ZDD|1|2|A|147
8ZDD|1|2|U|148
8ZDD|1|2|A|149
8ZDD|1|2|A|150
8ZDD|1|2|C|151
*
8ZDD|1|2|G|167
8ZDD|1|2|C|168
8ZDD|1|2|U|169
8ZDD|1|2|A|170
8ZDD|1|2|A|171
8ZDD|1|2|U|172
8ZDD|1|2|A|173
8ZDD|1|2|C|174

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

Small ribosomal subunit protein eS24