IL_8ZDD_028

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GGCC

Length

7 nucleotides

Bulged bases

8ZDD|1|2|C|548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_028 not in the Motif Atlas

Geometric match to IL_4V88_395

Geometric discrepancy: 0.1734

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

8ZDD|1|2|G|535
8ZDD|1|2|A|536
8ZDD|1|2|C|537
*
8ZDD|1|2|G|546
8ZDD|1|2|G|547
8ZDD|1|2|C|548
8ZDD|1|2|C|549

Current chains

Chain 2

18S rRNA

Nearby chains

Chain p

Serine/threonine-protein kinase RIO3