IL_8ZDD_046

3D structure

PDB id

8ZDD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human ubiquitylated pre-40S ribosome with RIOK3 (without NOB1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZDD_046 not in the Motif Atlas

Homologous match to IL_8C3A_437

Geometric discrepancy: 0.0944

The information below is about IL_8C3A_437

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

8ZDD|1|2|G|928
8ZDD|1|2|G|929
8ZDD|1|2|C|930
8ZDD|1|2|C|931
*
8ZDD|1|2|G|1010
8ZDD|1|2|A|1011
8ZDD|1|2|A|1012
8ZDD|1|2|U|1013

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain N

Small ribosomal subunit protein uS15

Chain b

Small ribosomal subunit protein eS27