IL_8ZEJ_057

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_057 not in the Motif Atlas

Geometric match to IL_4LFB_068

Geometric discrepancy: 0.0999

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8ZEJ|1|A|G|1401
8ZEJ|1|A|C|1402
8ZEJ|1|A|C|1403
8ZEJ|1|A|C|1404
*
8ZEJ|1|A|G|1497
8ZEJ|1|A|U|1498
8ZEJ|1|A|A|1499
8ZEJ|1|A|A|1500
8ZEJ|1|A|C|1501

Current chains

Chain A

16S rRNA

Nearby chains

Chain Y

Transfer RNA; tRNA

Chain b

Large subunit ribosomal RNA; LSU rRNA

Chain x

mRNA