IL_8ZEJ_095

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

8ZEJ|1|b|G|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_095 not in the Motif Atlas

Geometric match to IL_5J7L_271

Geometric discrepancy: 0.0992

The information below is about IL_5J7L_271

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.14

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

8ZEJ|1|b|G|862
8ZEJ|1|b|A|863
*
8ZEJ|1|b|U|913
8ZEJ|1|b|G|914
8ZEJ|1|b|C|915

Current chains

Chain b

23S rRNA

Nearby chains

Chain a

5S ribosomal RNA; 5S rRNA

Chain n

50S ribosomal protein L16

Chain y

50S ribosomal protein L27