IL_8ZEJ_108

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

8ZEJ|1|b|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_108 not in the Motif Atlas

Geometric match to IL_4WF9_044

Geometric discrepancy: 0.1197

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8ZEJ|1|b|C|1196
8ZEJ|1|b|G|1197
8ZEJ|1|b|U|1198
*
8ZEJ|1|b|A|1247
8ZEJ|1|b|G|1248
8ZEJ|1|b|U|1249
8ZEJ|1|b|G|1250

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain m

50S ribosomal protein L15

Chain r

50S ribosomal protein L20