IL_8ZEJ_131

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_131 not in the Motif Atlas

Geometric match to IL_4WF9_117

Geometric discrepancy: 0.0928

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

8ZEJ|1|b|G|1666
8ZEJ|1|b|G|1667
8ZEJ|1|b|A|1668
8ZEJ|1|b|A|1669
8ZEJ|1|b|C|1670
8ZEJ|1|b|U|1671
8ZEJ|1|b|A|1672
8ZEJ|1|b|G|1673
8ZEJ|1|b|G|1674
*
8ZEJ|1|b|C|1990
8ZEJ|1|b|U|1991
8ZEJ|1|b|G|1992
8ZEJ|1|b|U|1993
8ZEJ|1|b|C|1994

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain l

50S ribosomal protein L14