IL_8ZEJ_165

3D structure

PDB id

8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZEJ_165 not in the Motif Atlas

Geometric match to IL_7A0S_085

Geometric discrepancy: 0.0881

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8ZEJ|1|b|U|2457
8ZEJ|1|b|G|2458
8ZEJ|1|b|A|2459
*
8ZEJ|1|b|U|2493
8ZEJ|1|b|G|2494

Current chains

Chain b

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain n

50S ribosomal protein L16

Chain y

50S ribosomal protein L27