IL_8ZEJ_166
3D structure
- PDB id
- 8ZEJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome in complex with an engineered arrest peptide
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69 Å
Loop
- Sequence
- AUA*UGUUU
- Length
- 8 nucleotides
- Bulged bases
- 8ZEJ|1|b|U|2491
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZEJ_166 not in the Motif Atlas
- Geometric match to IL_7A0S_086
- Geometric discrepancy: 0.1292
- The information below is about IL_7A0S_086
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_36931.2
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 24
Unit IDs
8ZEJ|1|b|A|2459
8ZEJ|1|b|U|2460
8ZEJ|1|b|A|2461
*
8ZEJ|1|b|U|2489
8ZEJ|1|b|G|2490
8ZEJ|1|b|U|2491
8ZEJ|1|b|U|2492
8ZEJ|1|b|U|2493
Current chains
- Chain b
- 23S rRNA
Nearby chains
- Chain Z
- Transfer RNA; tRNA
- Chain n
- 50S ribosomal protein L16
- Chain y
- 50S ribosomal protein L27
Coloring options: