IL_8ZFF_020

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_020 not in the Motif Atlas

Geometric match to IL_8B0X_020

Geometric discrepancy: 0.0717

The information below is about IL_8B0X_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02111.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8ZFF|1|A|C|440
8ZFF|1|A|A|441
8ZFF|1|A|G|442
*
8ZFF|1|A|C|492
8ZFF|1|A|A|493
8ZFF|1|A|G|494
8ZFF|1|A|A|495
8ZFF|1|A|A|496
8ZFF|1|A|G|497

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4