IL_8ZFF_040

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

8ZFF|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_040 not in the Motif Atlas

Homologous match to IL_6CZR_410

Geometric discrepancy: 0.1913

The information below is about IL_6CZR_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

8ZFF|1|A|G|933
8ZFF|1|A|C|934
8ZFF|1|A|A|935
*
8ZFF|1|A|U|1380
8ZFF|1|A|U|1381
8ZFF|1|A|C|1382
8ZFF|1|A|C|1383
8ZFF|1|A|C|1384

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

Small ribosomal subunit protein uS7

Chain I

Small ribosomal subunit protein uS9

Chain Z

Transfer RNA; tRNA