IL_8ZFF_049

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

8ZFF|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_049 not in the Motif Atlas

Geometric match to IL_8B0X_050

Geometric discrepancy: 0.0908

The information below is about IL_8B0X_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8ZFF|1|A|G|1124
8ZFF|1|A|U|1125
8ZFF|1|A|U|1126
8ZFF|1|A|G|1127
8ZFF|1|A|C|1128
*
8ZFF|1|A|G|1144
8ZFF|1|A|A|1145
8ZFF|1|A|A|1146
8ZFF|1|A|C|1147
8ZFF|1|A|U|1148
8ZFF|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10