IL_8ZFF_080

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8ZFF|1|a|G|801, 8ZFF|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_080 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1106

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

8ZFF|1|a|G|674
8ZFF|1|a|A|675
8ZFF|1|a|A|676
8ZFF|1|a|A|677
8ZFF|1|a|C|678
*
8ZFF|1|a|G|799
8ZFF|1|a|A|800
8ZFF|1|a|G|801
8ZFF|1|a|A|802
8ZFF|1|a|U|803
8ZFF|1|a|A|804
8ZFF|1|a|G|805
8ZFF|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15