IL_8ZFF_104
3D structure
- PDB id
- 8ZFF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 8ZFF|1|a|C|1045, 8ZFF|1|a|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8ZFF_104 not in the Motif Atlas
- Geometric match to IL_8B0X_104
- Geometric discrepancy: 0.1395
- The information below is about IL_8B0X_104
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8ZFF|1|a|C|1043
8ZFF|1|a|C|1044
8ZFF|1|a|C|1045
8ZFF|1|a|A|1046
8ZFF|1|a|G|1047
8ZFF|1|a|A|1048
8ZFF|1|a|C|1049
8ZFF|1|a|A|1050
8ZFF|1|a|G|1051
*
8ZFF|1|a|U|1108
8ZFF|1|a|C|1109
8ZFF|1|a|G|1110
8ZFF|1|a|A|1111
8ZFF|1|a|G|1112
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain g
- Large ribosomal subunit protein uL6
Coloring options: