IL_8ZFF_107

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8ZFF|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_107 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1738

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

8ZFF|1|a|C|1208
8ZFF|1|a|U|1209
8ZFF|1|a|G|1210
8ZFF|1|a|C|1211
8ZFF|1|a|G|1212
8ZFF|1|a|A|1213
8ZFF|1|a|A|1214
8ZFF|1|a|G|1215
*
8ZFF|1|a|U|1234
8ZFF|1|a|G|1235
8ZFF|1|a|G|1236
8ZFF|1|a|A|1237
8ZFF|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20