IL_8ZFF_110

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

8ZFF|1|a|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_110 not in the Motif Atlas

Homologous match to IL_7A0S_047

Geometric discrepancy: 0.2353

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

8ZFF|1|a|C|1319
8ZFF|1|a|C|1320
8ZFF|1|a|A|1321
8ZFF|1|a|A|1322
8ZFF|1|a|C|1323
*
8ZFF|1|a|G|1331
8ZFF|1|a|G|1332
8ZFF|1|a|G|1333

Current chains

Chain a

23S rRNA

Nearby chains

Chain r

Large ribosomal subunit protein uL22