IL_8ZFF_114

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

8ZFF|1|a|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_114 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.4817

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

8ZFF|1|a|C|1417
8ZFF|1|a|G|1418
8ZFF|1|a|A|1419
8ZFF|1|a|A|1420
8ZFF|1|a|G|1421
*
8ZFF|1|a|C|1577
8ZFF|1|a|U|1578
8ZFF|1|a|A|1579
8ZFF|1|a|A|1580
8ZFF|1|a|G|1581

Current chains

Chain a

23S rRNA

Nearby chains