IL_8ZFF_116

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

8ZFF|1|a|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_116 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.1438

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8ZFF|1|a|C|1437
8ZFF|1|a|U|1438
8ZFF|1|a|A|1439
8ZFF|1|a|U|1440
*
8ZFF|1|a|A|1551
8ZFF|1|a|A|1552
8ZFF|1|a|A|1553
8ZFF|1|a|U|1554
8ZFF|1|a|G|1555

Current chains

Chain a

23S rRNA

Nearby chains