IL_8ZFF_148

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_148 not in the Motif Atlas

Geometric match to IL_8B0X_147

Geometric discrepancy: 0.0875

The information below is about IL_8B0X_147

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14250.1

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

10

Unit IDs

8ZFF|1|a|A|2297
8ZFF|1|a|A|2298
8ZFF|1|a|U|2299
*
8ZFF|1|a|A|2317
8ZFF|1|a|G|2318
8ZFF|1|a|G|2319
8ZFF|1|a|U|2320
8ZFF|1|a|U|2321

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

Large ribosomal subunit protein uL5