IL_8ZFF_166

3D structure

PDB id

8ZFF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome without hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

8ZFF|1|a|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFF_166 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1388

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8ZFF|1|a|G|2737
8ZFF|1|a|A|2738
8ZFF|1|a|U|2739
8ZFF|1|a|A|2740
8ZFF|1|a|A|2741
8ZFF|1|a|G|2742
*
8ZFF|1|a|C|2762
8ZFF|1|a|G|2763
8ZFF|1|a|A|2764
8ZFF|1|a|A|2765
8ZFF|1|a|A|2766
8ZFF|1|a|C|2767

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13