IL_8ZFG_013

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

8ZFG|1|A|U|244, 8ZFG|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_013 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.143

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

8ZFG|1|A|G|242
8ZFG|1|A|A|243
8ZFG|1|A|U|244
8ZFG|1|A|U|245
8ZFG|1|A|A|246
8ZFG|1|A|G|247
*
8ZFG|1|A|C|277
8ZFG|1|A|G|278
8ZFG|1|A|A|279
8ZFG|1|A|C|280
8ZFG|1|A|G|281
8ZFG|1|A|A|282
8ZFG|1|A|U|283
8ZFG|1|A|C|284

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17