IL_8ZFG_019

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_019 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.1174

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

8ZFG|1|A|U|409
8ZFG|1|A|G|410
8ZFG|1|A|A|411
8ZFG|1|A|A|412
8ZFG|1|A|G|413
8ZFG|1|A|A|414
8ZFG|1|A|A|415
8ZFG|1|A|G|416
*
8ZFG|1|A|U|427
8ZFG|1|A|G|428
8ZFG|1|A|U|429
8ZFG|1|A|A|430
8ZFG|1|A|A|431
8ZFG|1|A|A|432
8ZFG|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4