IL_8ZFG_020

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_020 not in the Motif Atlas

Geometric match to IL_8B0X_020

Geometric discrepancy: 0.0923

The information below is about IL_8B0X_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02111.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

8ZFG|1|A|C|440
8ZFG|1|A|A|441
8ZFG|1|A|G|442
*
8ZFG|1|A|C|492
8ZFG|1|A|A|493
8ZFG|1|A|G|494
8ZFG|1|A|A|495
8ZFG|1|A|A|496
8ZFG|1|A|G|497

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4