IL_8ZFG_035

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_035 not in the Motif Atlas

Homologous match to IL_6CZR_144

Geometric discrepancy: 0.1336

The information below is about IL_6CZR_144

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8ZFG|1|A|G|774
8ZFG|1|A|G|775
8ZFG|1|A|G|776
8ZFG|1|A|A|777
8ZFG|1|A|G|778
*
8ZFG|1|A|U|804
8ZFG|1|A|C|805

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain c

Large ribosomal subunit protein uL2