IL_8ZFG_048

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_048 not in the Motif Atlas

Homologous match to IL_6CZR_157

Geometric discrepancy: 0.147

The information below is about IL_6CZR_157

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_08069.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

8ZFG|1|A|G|1061
8ZFG|1|A|U|1062
8ZFG|1|A|C|1063
*
8ZFG|1|A|G|1193
8ZFG|1|A|U|1194
8ZFG|1|A|C|1195

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain E

Small ribosomal subunit protein uS5

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14