IL_8ZFG_049

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

8ZFG|1|A|U|1126

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_049 not in the Motif Atlas

Geometric match to IL_8B0X_050

Geometric discrepancy: 0.0898

The information below is about IL_8B0X_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38603.1

Basepair signature

cWW-cWS-L-R-L-R-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8ZFG|1|A|G|1124
8ZFG|1|A|U|1125
8ZFG|1|A|U|1126
8ZFG|1|A|G|1127
8ZFG|1|A|C|1128
*
8ZFG|1|A|G|1144
8ZFG|1|A|A|1145
8ZFG|1|A|A|1146
8ZFG|1|A|C|1147
8ZFG|1|A|U|1148
8ZFG|1|A|C|1149

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10