IL_8ZFG_059

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

8ZFG|1|A|A|1492, 8ZFG|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_059 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.2674

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8ZFG|1|A|5MC|1407
8ZFG|1|A|A|1408
8ZFG|1|A|C|1409
*
8ZFG|1|A|G|1491
8ZFG|1|A|A|1492
8ZFG|1|A|A|1493
8ZFG|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain a

Large subunit ribosomal RNA; LSU rRNA