IL_8ZFG_098

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_098 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.1609

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8ZFG|1|a|U|1004
8ZFG|1|a|C|1005
8ZFG|1|a|C|1006
8ZFG|1|a|C|1007
8ZFG|1|a|A|1008
8ZFG|1|a|A|1009
8ZFG|1|a|A|1010
8ZFG|1|a|G|1011
*
8ZFG|1|a|C|1150
8ZFG|1|a|A|1151

Current chains

Chain a

23S rRNA

Nearby chains

Chain i

Large ribosomal subunit protein uL13

Chain p

Large ribosomal subunit protein bL20