IL_8ZFG_107

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8ZFG|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_107 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1907

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

8ZFG|1|a|C|1208
8ZFG|1|a|U|1209
8ZFG|1|a|G|1210
8ZFG|1|a|C|1211
8ZFG|1|a|G|1212
8ZFG|1|a|A|1213
8ZFG|1|a|A|1214
8ZFG|1|a|G|1215
*
8ZFG|1|a|U|1234
8ZFG|1|a|G|1235
8ZFG|1|a|G|1236
8ZFG|1|a|A|1237
8ZFG|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20