IL_8ZFG_112

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_112 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2384

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8ZFG|1|a|C|1357
8ZFG|1|a|G|1358
8ZFG|1|a|A|1359
8ZFG|1|a|G|1360
8ZFG|1|a|G|1361
*
8ZFG|1|a|C|1370
8ZFG|1|a|G|1371
8ZFG|1|a|U|1372
8ZFG|1|a|A|1373
8ZFG|1|a|G|1374

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34

Chain c

Large ribosomal subunit protein uL2

Chain w

Large ribosomal subunit protein bL28