IL_8ZFG_116

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

8ZFG|1|a|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_116 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.143

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8ZFG|1|a|C|1437
8ZFG|1|a|U|1438
8ZFG|1|a|A|1439
8ZFG|1|a|U|1440
*
8ZFG|1|a|A|1551
8ZFG|1|a|A|1552
8ZFG|1|a|A|1553
8ZFG|1|a|U|1554
8ZFG|1|a|G|1555

Current chains

Chain a

23S rRNA

Nearby chains