IL_8ZFG_129

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

8ZFG|1|a|U|1714

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_129 not in the Motif Atlas

Geometric match to IL_8B0X_128

Geometric discrepancy: 0.0436

The information below is about IL_8B0X_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8ZFG|1|a|U|1712
8ZFG|1|a|A|1713
8ZFG|1|a|U|1714
8ZFG|1|a|G|1715
8ZFG|1|a|U|1716
8ZFG|1|a|A|1717
8ZFG|1|a|G|1718
*
8ZFG|1|a|U|1742
8ZFG|1|a|G|1743
8ZFG|1|a|A|1744
8ZFG|1|a|A|1745
8ZFG|1|a|A|1746

Current chains

Chain a

23S rRNA

Nearby chains