IL_8ZFG_149

3D structure

PDB id

8ZFG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with hypoxia-induced rRNA modifications

Experimental method

ELECTRON MICROSCOPY

Resolution

2.68 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8ZFG_149 not in the Motif Atlas

Homologous match to IL_7A0S_081

Geometric discrepancy: 0.1525

The information below is about IL_7A0S_081

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8ZFG|1|a|C|2350
8ZFG|1|a|G|2351
8ZFG|1|a|A|2352
8ZFG|1|a|G|2353
*
8ZFG|1|a|C|2364
8ZFG|1|a|G|2365
8ZFG|1|a|A|2366
8ZFG|1|a|G|2367

Current chains

Chain a

23S rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain n

Large ribosomal subunit protein uL18

Chain v

Large ribosomal subunit protein bL27